by Stuart Davis | May 7, 2020 | Announcements
If your lab or company is working with COVID-19 data, Basepair is ready to handle your analysis needs. We do this in two ways: You can use our existing infrastructure and pipelines to run your analyses. The SARS-CoV-2 genome is already available on Basepair. If you...
by Stuart Davis | Mar 9, 2020 | Announcements
Basepair has an easy-to-use upload page that is ideal for the majority of our users. Select the samples you want to upload from your local computer, specify the sample metadata, and start the upload. Samples upload as fast as your internet connection allows. But what...
by Amit | Oct 30, 2019 | Views
Among the factors responsible for scaring people away from bioinformatics, the various input and output filetypes surely rank very high. If you want to plot heat maps using ngsplot, you need a bam file. If you want to use deeptools instead, also to make heat maps, you...
by Stuart Davis | Oct 26, 2019 | Bioinformatics
Trimming for adaptors and low quality bases is important part of the analysis pipeline for sequencing data. Typically, after you isolate and fragment your RNA sample, adaptors are attached to the ends of the sequences that are needed for sequencing (see [1,2] for more...
by Stuart Davis | Jul 18, 2019 | Announcements
Key features We are pleased to announce the release of Basepair’s significantly updated single cell RNA-seq (scRNA-seq) pipeline. It brings many improvements in new features, efficiency, and user friendliness: 1. Seurat version 3 Version 3 of the scRNA-seq...
