If your lab or company is working with COVID-19 data, Basepair is ready to handle your analysis needs. We do this in two ways:

  1. You can use our existing infrastructure and pipelines to run your analyses. The SARS-CoV-2 genome is already available on Basepair.
  2. If you created a COVID-19 kit and need a custom analysis pipeline, we’ll work with your team to build it. 

An Infrastructure Designed for Customization

Basepair’s infrastructure is designed to accommodate custom pipelines, which means that adding your pipeline is fast and seamless. Depending on its complexity, a custom pipeline can be added to Basepair, tested, and ready to go in as little as 3 days.

Below is a reference pipeline for SARS-CoV-2 data that Basepair has previously created.  

SARS-CoV-2 Analysis Report Features

The report for this pipeline includes quality control and alignment metrics, a coverage plot, performance metrics, table of variants, and a genome browser. All figures and tables are interactive.

Fast and Secure Analysis Pipelines

Basepair’s goal is to help mitigate the analysis bottlenecks that researchers so frequently face. We do this by creating an easy-to-use platform and a simple way to add custom pipelines.  Analyses always run in parallel in Basepair’s encrypted cloud, so results are generated quickly, regardless of data volumes. If you’d like to learn more about Basepair’s custom pipelines, get in touch with us to discuss your project.