From small labs to large enterprises, we have a plan to fit your needs.

Basepair’s pricing models are affordable and transparent. Both plans include API access as well as use of a multitude of industry standard tools for all data types and unlimited access to dynamic visualization & reporting capabilities.

Contact us at to discuss more custom options.


What is included in the price?

The price includes storage of raw data and results, unlimited analyses, and review of your results with our experienced bioinformaticians.

Why is there such a big range in price per sample?

The price per sample is based on the size of the data, which can vary significantly. A small resequencing may have less than 1GB of raw data, whereas a whole genome sequencing can have over 100GB of data. In general, single cell and WGS samples are the largest and cost $200/sample. WES, ATAC, ChIP, and RNA-seq data generally cost $100/sample. Small panels can bring down the cost per sample to $20 or less. Keep in mind that customers with many samples get significant volume discounts. Reach out to us to get a quote. 

I have a lot of samples I need to analyze. Do you offer any discounts?

Yes! We offer volume discounts based on the number of samples you need to analyze. Contact us to learn about our volume discount pricing policy.

Which payment methods are accepted?

We accept PO, credit card, check, and bank transfer.


How many analyses can I run per sample?

Once your sample is uploaded to Basepair, you can run an unlimited number of analyses!

How long will it take to run an analysis on Basepair?

Basepair’s workflows are fully automated, which means most analyses take one hour or less to run! If you’ve had to wait for weeks for your bioinformatics core to analyze your data and this sounds too good to be true, we suggest you sign up for our free trial to see for yourself just how fast Basepair is. You can upload up to six samples for free.

I’m not a bioinformatician. Will I really be able to figure out how to run an analysis on my own?

Most of our customers are researchers without a bioinformatics background and no programming experience. Basepair takes care of the backend processing and provides your results in an interactive report, no coding required. In addition, our customers have access to support from our bioinformatics team, who will be happy to answer questions you may have.

Do you offer NGS sequencing?

We specialize in NGS analysis and do not offer NGS sequencing, but we will be happy to direct you to a provider who does. Once your sequencing data is ready, we can import the data from the sequencer via an API directly to Basepair’s cloud for analysis. This means you can start analyzing your samples as soon as they are sequenced — no need to download, upload, or wait for sequencing data to ship on a hard drive. 




Tell us what type of data you're working with and how many samples you need to analyze. We'll send you a quote AND let you know if you're eligible for any volume discounts.

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