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Analyze your NGS data with Basepair
Quickly analyze RNA-seq, DNA-seq, ChIP-seq and ATAC-seq data with Basepair’s automated pipelines. Our cloud platform instantly scales to analyze thousands of samples in parallel.
Our Customers
COVID-19 Researchers: We can help speed up your work with fast NGS analysis pipelines and premium support. Contact us to learn about special pricing for COVID-19 research.
How Basepair Works
STEP 1
STEP 2
Basepair starts running your analysis. Thanks to our cloud-based software and AI-powered algorithms, most analyses take 1 hour or less to run. Basepair is fast!
STEP 3
Features At A Glance
Web-based
Easy to Use
Run pipelines with a few clicks, less than a minute hands-on time per sample.
Fast
Most pipelines finish in an hour, multiple analyses in parallel, no wait time.
Ready to go Pipelines
Fully automated pipelines for DNA-Seq, RNA-Seq, ChIP-Seq, ATAC-Seq, etc.
Support
Custom Pipelines
Develop and run custom pipelines using any combination of public and private tools.
API
Security
Trusted Automated Pipelines for Most NGS Data
DNA-Seq
QC
Alignment
Process reads
Variant calling
Annotation
RNA-Seq
QC
Alignment
Expression count
Differential expression
ChIP-Seq
QC
Alignment
Peak calling and annotation
Motifs
ATAC-Seq
QC
Alignment
Peak calling and annotation
Open chromatin regions
Learn how automated workflows simplify NGS analysis.
Basepair Work is in Dozens of Peer-Reviewed Journals
"Fast, excellent and reasonably priced...you CAN get all three!! Thank you to the folks at Basepair for helping us deal with some difficult RNA Seq data."
"I really like how easy the website is to use. And how quickly the results are generated, including figures. I would have never thought about doing a new analysis like I just did."
"Support answers come fast and are always precise!"
