Analyze your NGS data in hours
Upload your raw data, choose among several high quality workflows for RNA-Seq, ChIP-Seq, DNA-Seq, etc. and get results in an hour. Start free trialLearn moreTrusted by scientists at
Our customers are saying
Fast, excellent and reasonably priced…you CAN get all three!! Thank you to the folks at Basepair for helping us deal with some difficult RNA Seq data.
Sharen MckayI really like how easy the website is to use. And how quickly the results are generated, including figures. I would have never thought about doing a new analysis like I just did.
Emilie MontenontSupport answers come fast and are always precise!
Maria HollnagelFeatures at a glance
Web-based
Ready 24/7, signup and use online. No software to install, no hardware to buy.
Easy to Use
Run workflows with a few clicks, less than a minute hands-on time per sample.
Fast
Most workflows finish in an hour, multiple analyses in parallel, no wait time.
Workflows to go
Fully automated workflows for DNA-Seq, RNA-Seq, ChIP-Seq, ATAC-Seq, etc.
Support
Basepair’s scientists are available to help over phone, email, or in-person.
Custom workflows
Develop and run custom workflows using any combination of public and private tools.
API
Use REST, Python API or CLI to automate and integrate large projects.
Security
All data is encrypted during rest and transfer and servers behind firewall.