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Analyze your NGS data with Basepair
Quickly analyze RNA-seq, DNA-seq, ChIP-seq and ATAC-seq data with Basepair’s automated pipelines. Our cloud platform instantly scales to analyze thousands of samples in parallel.
Our Customers
COVID-19 Researchers: We can help speed up your work with fast NGS analysis pipelines and premium support. Contact us to learn about special pricing for COVID-19 research.
How Basepair Works
STEP 1
Upload your NGS data to Basepair and select the analyses you want to run from among 30+ automated pipelines.
STEP 2
Basepair starts running your analysis. Thanks to our cloud-based software and AI-powered algorithms, most analyses take 1 hour or less to run. Basepair is fast!
STEP 3
Your analysis is ready! Your results are available online in an interactive report: share your report with colleagues anywhere in the world, use filters and sliders to adjust parameters, download high-res figures, and export files for additional analysis.
Features At A Glance
Web-based
Ready 24/7. No software to install, no hardware to buy. All you need is an internet connection
Easy to Use
Run workflows with a few clicks, less than a minute hands-on time per sample.
Fast
Most workflows finish in an hour, multiple analyses in parallel, no wait time.
Workflows to go
Fully automated workflows for DNA-Seq, RNA-Seq, ChIP-Seq, ATAC-Seq, etc.
Support
Basepair’s scientists are available to help over phone, email, or in-person.
Custom workflows
Develop and run custom workflows using any combination of public and private tools.
API
Use REST, Python API or CLI to automate and integrate large projects.
Security
All data is encrypted during rest and transfer and servers behind firewall.
Trusted Automated Pipelines for Most NGS Data
DNA-Seq
QC
Alignment
Process reads
Variant calling
Annotation
RNA-Seq
QC
Alignment
Expression count
Differential expression
ChIP-Seq
QC
Alignment
Peak calling and annotation
Motifs
ATAC-Seq
QC
Alignment
Peak calling and annotation
Open chromatin regions
Learn how automated workflows simplify NGS analysis.
Basepair Work is in Dozens of Peer-Reviewed Journals
"Fast, excellent and reasonably priced...you CAN get all three!! Thank you to the folks at Basepair for helping us deal with some difficult RNA Seq data."
"I really like how easy the website is to use. And how quickly the results are generated, including figures. I would have never thought about doing a new analysis like I just did."
"Support answers come fast and are always precise!"
