by Charles Murphy | Jul 18, 2019 | Announcements
Key features We are pleased to announce the release of Basepair’s significantly updated single cell RNA-seq (scRNA-seq) pipeline. It brings many improvements in new features, efficiency, and user friendliness: 1. Seurat version 3 Version 3 of the scRNA-seq...
by Amit | Jun 10, 2019 | Announcements
Sometimes popular NGS analysis pipelines aren’t enough, and your team needs a custom solution. EpiCypher, a biotech company that develops cutting-edge technologies for epigenetic and chromatin biology, needed a specialized pipeline built for their internal team and...
by Amit | May 12, 2019 | Announcements
Our team of bioinformaticians and developers have spent over 15 years conducting NGS data analysis before starting Basepair. During the ol’ manual NGS data analysis days, there were some good times… and there was also plenty of frustration. Much of NGS...
by Amit | May 7, 2019 | Announcements
When auditing goes wrong Is your genomics team keeping track of the open source tools it’s using? What about software version numbers and the parameters being set? Genome reference files, usage logs, the custom scripts bioinformaticians are deploying? If you’re not...
by Amit | Apr 30, 2019 | Announcements
When Dr. Omar Abdel-Wahab at Memorial Sloan Kettering Cancer Center decided to undertake a project exploring the molecular mechanisms of ASXL2 – a frequently mutated gene in acute myeloid leukemia patients with the AML1-ETO fusion oncoprotein – he had...
by Amit | Apr 11, 2019 | Announcements
Audits are probably the most dreaded aspect of NGS data analysis, and like specters, they come in many forms to haunt you. You might need to publish results from several years back, only to realize that the open source tools you used have dramatically changed, forcing...
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