by Stuart Davis | Mar 5, 2019 | Bioinformatics
Background One of the most popular tools for pathway enrichment analysis for RNA-seq and microarray data is the Gene Set Enrichment Analysis (GSEA) tool by the Broad Institute [1,2]. The database of pathways most often used with GSEA is MSigDB, also by the Broad...
by Stuart Davis | Sep 13, 2018 | Announcements
TATAA Biocenter, the world’s foremost organizer of hands-on training in molecular diagnostics and Europe’s leading provider of genomic services, has partnered with us, Basepair. We are a leading provider of Next Generation Sequencing (NGS) data analysis...
by Stuart Davis | Aug 27, 2018 | Bioinformatics
The performance of NGS alignment tools has continuously improved, but sorting the aligned data now takes more time than alignment. A big leap in sorting was recently initiated with SAMtools version 1.x, with support for parallel processing for sorting. We compared the...
