Blog
Basepair API features
We’ve heard the war stories from our fellow bioinformaticians and lab directors: waking up bleary-eyed in the middle of the night to check on the results of an NGS data analysis pipeline, converting files to different formats, setting up the next step of their...
Meet Basepair at Bio-IT World 2019
Basepair will be at this year’s Bio-IT World Meet Basepair in Boston, MA from April 16-18, and connect with us to learn how you can run NGS analysis at scale. Our platform is trusted by top institutions such as Partners Healthcare, Harvard Medical School, NYU,...
Performing pathway enrichment with non-human species
Background One of the most popular tools for pathway enrichment analysis for RNA-seq and microarray data is the Gene Set Enrichment Analysis (GSEA) tool by the Broad Institute [1,2]. The database of pathways most often used with GSEA is MSigDB, also by the Broad...
TATAA Biocenter partners with Basepair to offer faster NGS data analysis
TATAA Biocenter, the world's foremost organizer of hands-on training in molecular diagnostics and Europe's leading provider of genomic services, has partnered with us, Basepair. We are a leading provider of Next Generation Sequencing (NGS) data analysis solutions, to...
Abdel-Wahab Lab – ASXL2
SAMtools vs sambamba: Which Tool Sorts BAM Files Faster?
The performance of NGS alignment tools has continuously improved, but sorting the aligned data now takes more time than alignment. A big leap in sorting was recently initiated with SAMtools version 1.x, with support for parallel processing for sorting. We compared the...