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Why Beginners and Experts Alike Opt for Platforms in Genomics Infrastructure

Why Beginners and Experts Alike Opt for Platforms in Genomics InfrastructureWhen setting up a genomics infrastructure, teams across all skill levels—beginners, intermediates, and experts—often converge on surprisingly similar decisions. Whether the goal is to...

The Rise of SaaS in Bioinformatics: Navigating Cloud Pricing Models for Your Enterprise – Part 2

The Rise of SaaS in Bioinformatics: Navigating Cloud Pricing Models for Your Enterprise - Part 2 In our previous blog on the rise of Software as a Service (SaaS) in bioinformatics, we explored various cloud pricing models that are reshaping how organizations access...

Breaking Barriers in Platform Bioinformatics: The GPU-Accelerated Future With Intuitive Visual Interfaces That Ensures Data Remains In Place

Breaking Barriers in Platform Bioinformatics: The GPU-Accelerated Future With Intuitive Visual Interfaces That Ensure  Data Remains in PlaceHow Basepair is teaming with NVIDIA and AWS to put powerful yet easy-to-use genomics tools in researchers' hands without...

The Rise of SaaS in Bioinformatics: Navigating Cloud Pricing Models for Your Enterprise – Part 1

The Rise of SaaS in Bioinformatics: Navigating Cloud Pricing Models for Your Enterprise - Part 1 In recent years, the bioinformatics industry has witnessed a significant shift towards standardized cloud solutions offered by Software as a Service (SaaS) companies. This...

Navigating NGS Data Analysis on AWS: Key Considerations for New-To Sequencing Life Sciences Organizations

Introduction Congratulations on your investment in a new sequencing instrument! You now hold the key to unlocking the secrets hidden within the vast world of genomics. But the journey doesn’t end with data generation; it begins there. To effectively harness the...

Meet Basepair at Bio-IT World 2019

Basepair will be at this year’s Bio-IT World Meet Basepair in Boston, MA from April 16-18, and connect with us to learn how you can run NGS analysis at scale. Our platform is trusted by top institutions such as Partners Healthcare, Harvard Medical School, NYU,...

Performing pathway enrichment with non-human species

Background One of the most popular tools for pathway enrichment analysis for RNA-seq and microarray data is the Gene Set Enrichment Analysis (GSEA) tool by the Broad Institute [1,2]. The database of pathways most often used with GSEA is MSigDB, also by the Broad...

Hello, World

Basepair was founded in direct response to the challenges I was personally facing with Next Generation Sequencing (NGS) analysis while working at Harvard Medical School and other research institutions. NGS has witnessed a data deluge three times larger than Moore's...