by Stuart Davis | Mar 27, 2023 | Announcements
As you may already know, Basepair offers a number of very popular tools for ChIP-seq analysis, seamlessly taking your FASTQ files to meaningful results. From trimming and alignment, peak calling and annotation, to motif enrichment and now, pathway enrichment analysis...
by Rohan Sharma | Sep 12, 2022 | Bioinformatics
Is it necessary to do base quality score recalibration (BQSR) in the GATK pipeline? How should this be done without an available vcf file of known sites? (a) Unfortunately the quality scores produced by next generation sequencing instruments are subject to...