Analyze your NGS data in hours

Upload your raw data, choose among several high quality workflows for RNA-Seq, ChIP-Seq, DNA-Seq, etc. and get results in an hour. Start free trialLearn more

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Features at a glance


Ready 24/7, signup and use online. No software to install, no hardware to buy.

Easy to Use

Run workflows with a few clicks, less than a minute hands-on time per sample.



Most workflows finish in an hour, multiple analyses in parallel, no wait time.

Workflows to go

Fully automated workflows for QC, alignment, 2°, 3° analyses and figures.


Use REST, Python API or CLI to automate and integrate large projects.


Run 1000+ analyses in parallel and practically unlimited storage.


Provide fine-grained access to your data to your collaborators around the world.

Visual reports

Our workflows generate rich reports with visualization of data and results.


Basepair’s scientists are available to help over phone, email, or in-person.

Custom workflows

Develop and run custom workflows using any combination of public and private tools.



Scientific consultation for complex questions, data integration, figures for publications, etc.



All data is encrypted during rest and transfer and servers behind firewall.

Analyze your NGS data today, get results in hours

Sign up for a free trial