Clinical Research & Diagnostics

Game-changing research: from laboratory to clinic.

NGS data is immensely powerful for advancing personalized medicine, but with each genome, raw data alone is up to 100 gb per sample, multiplied over 1000s of samples!

Having the right tools to analyze and make sense of the data is key to advancing personalized diagnostic and treatment capabilities.

Basepair helps physicians and lab directors meet this challenge. Our scalable NGS analysis takes only an hour or less. The customizable reporting tools let you slice and dice the data to quickly identify genomic disease markers and map the course of treatment.


Simplified NGS data analysis and reporting is at the heart of what we help you achieve. Using Basepair, physicians and physician-researchers can easily test hypotheses, isolate actionable biomarkers and share their findings, leading to deeper insights and better informed treatment decisions.

Higher quality more accessible data leads to deeper insight. Basepair works with physicians to fully automate NGS data analysis for patient diagnostics and treatment. Our cloud-native solution scales to handle 1000+ parallel analysis and integrates directly with internal storage systems and cloud storage (S3, Gdrive, Box, etc.)

Key Benefits

Basepair has the proven technology and expertise to successfully help organizations transform NGS-based diagnosis and advance innovation forward.

With Basepair, you can automatically prepare 1000s of samples in less than an hour. The end result? Quick turnaround and timely availability of actionable information.

  • Analyse and share NGS data in hours not weeks or months
  • Trusted by top research universities and publications
  • Easy to use, get started in minutes!
  • Flexible, scalable and powerful enterprise-class software
  • Customized NGS analysis and reporting
  • Ready reports and interactive databases for further analysis
  • Web based, so there is no software to install, manage and upgrade.
  • Your samples and results are available online 24-7.
  • API-level controls for all tasks, such as to add new samples, run analysis and download results.

Types of Analysis

An overview of Basepair workflows for NGS applications.


See Basepair powered NGS research in peer-reviewed journals.

NGS Workflows

The bread and butter of our platform is automated workflows, which save teams thousands of hours.

Trusted by top research hospitals worldwide

Read the latest from our blog

Basepair API features

We’ve heard the war stories from our fellow bioinformaticians and lab directors: waking up bleary-eyed in the middle of the night to check on the results of an NGS data analysis pipeline, converting files to different formats, setting up the next step of their...

read more

Visualizing your NGS results with Basepair

Writers write, painters paint, genomics researchers… wait patiently for algorithm pipelines to finish processing NGS data, only to spend as much time visualizing results? As long-time researchers and bioinformaticians, we’re well aware that in NGS data analysis, every...

read more